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… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our eukaryotic genomes. Fungal … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …

Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … ecosystems and industries. The program also explores microeukaryotic members of microbial communities, cataloging gene … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so … pathways in a microbial cell, it looks like. It could be a eukaryotic cell, but you know, it’s like a big rectangle …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how …

… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …

Miscanthus  sequence offers insights into benefits of polyploidy and … genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of … abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and …

And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred …