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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … gene classes I could start on. So… but you started with two genomes, right? DAN UDWARY: Right. NADINE ZIEMERT: And … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, …
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Partnerships Development Team
Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … to license Lab inventions generated through the CRADA.  … New Leaf Symbiotics is partnering with the JGI and Berkeley … JGI Metabolomics Science Program Head Yasuo Yoshikuni, JGI DNA Synthesis Science Program Head Ian Blaby, JGI DNA …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … he tells us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a … better to do it together, to join forces instead of to make two competing tools. If we had known about your tool, Dan, …
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Natural Prodcast Episode 14: Nigel Mouncey
… natural products for agriculture, and his upcoming new role as the Society for Industrial Microbiology and … on the way – I’m going to try to keep them coming out every two weeks for a while – so I hope you’ll be listening. But … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Natural Prodcast Episode 18: A CSP Primer
… be proposing a larger project that requires the work of two or more DOE user science facilities. That’s kind of out … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the annotate, …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … known things that were out there and created some good rule sets and put it all together in one package so that it … lots of stuff. On average, we had something– I think we had two biosynthetic clusters per MAG, which is pretty good …
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Data Policy & Support
… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In … 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., Lambie S. C., Cookson A. L., … (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. Science. 346:698-9 (2014). …
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Natural Prodcast Episode 22: Alison Narayan
I’m interested in the world of natural products is also twofold but for different reasons to learn about how nature … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … who’s also at the University of Michigan and a really talented graduate student, Chad, he predicted that …
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Natural Prodcast Episode 4: Nancy Keller
… that got me into natural products to be truthful. So, well, two things. My PhD work was with a fungal pathogen called … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … look at and how much difference you need to have on cluster sets that are sort of the same. You know, family clusters, …
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