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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are …
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Project Management Office
… PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … like, and then you could characterize it. The classical study that demonstrated this is Challis et al, Chemistry and … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … kept looking for open jobs that said, we want a chemist to study the ocean. And I didn’t find a single job … a lot here. BILL FENICAL: Yeah, Streptomycetes is a very horrible genus. Because first of all, it’s not a fungus, so …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … a table of standard product offerings, including a description of the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all …
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Prokaryote Program User Advisory Committee
… is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee … is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the …
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Natural Prodcast Episode 5: Brad Moore
… So like, as an undergraduate, I was like, no, I’m going to study architecture. I like making things and designing … genes be up-regulated. So, there are now ways that we can correlate environmental signals back to active transcription. … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …
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Programs & Platform Leads
… providing genome science capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for energy and infrastructure security. In … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence …
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Game On: High School Students Drive Everglades Metagenomics Study
… Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the … .  Lastly, for this project the students calculated the correlations between the integral biomarkers and abiotic …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …
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