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Natural Prodcast Episode 10: A Primer on Genome Mining
… you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool … paper is here . Read the associated JGI news release here . Software we discussed, used for genome mining: AntiSMASH …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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Bioboxes: standardised containers for interchangeable bioinformatics software
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Benjamin Cole
… Implementation of the Index of Cell Identity as an R package … Software …
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Natural Prodcast Episode 15: Katherine Duncan
… experimental protocols, media recipes, plasmid maps, useful software tools, and more. We didn’t discuss it here, but you …
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Secondary Metabolites Program
… are provided to display annotation data from many common software tools, and from many users, so that the data is …
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Natural Prodcast Episode 12: Nadine Ziemert
… to– DAN UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, …
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