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PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … Policy … Data Management at the JGI … Policy Definitions … Sequencing and Metabolomics projects … DNA synthesis …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … … The Microbial Program focuses on using advanced sequencing technologies to explore microbial diversity — … datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in …

… and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced … and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phytozome is the JGI's …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex … of phylogenomic novelty: Advances in metagenomic sequencing, assembly and binning have enabled reconstruction …

… experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … UDWARY: I think that was one of the JGI’s early moves into sequencing things for the purpose of looking at the … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like …

So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – to get … sequence is really cheap. I’ve got colleagues that are sequencing dozens and dozens of fungi, mostly coming out of …

… in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA … And you would scan those pieces by hybridization or maybe sequencing if you were rich enough. [CHUCKLES] And once you …

… plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence … in publication of results. … Submission … More on Sequencing Projects …

The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … of sustainable biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …

… all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data … access to information regarding genome and metagenome sequencing projects, and their associated metadata, around … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …