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… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … terrestrialization of fungi. The placement of flagellated zoosporic Olpidium within the non-flagellated terrestrial … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …

… into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to explore the data …

… For sequencing or metabolomics projects: data are subject to a  … Sequencing and Metabolomics projects …

… by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users rely …

… and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced … and to conduct comparative and genome-centric analyses of fungi and community annotation. …

… So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – to get … sequence is really cheap. I’ve got colleagues that are sequencing dozens and dozens of fungi, mostly coming out of …

… I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … UDWARY: I think that was one of the JGI’s early moves into sequencing things for the purpose of looking at the … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … The Microbial Program focuses on using advanced sequencing technologies to explore microbial diversity — … datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in …

… experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, assembly and binning have enabled reconstruction …

… in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA … And you would scan those pieces by hybridization or maybe sequencing if you were rich enough. [CHUCKLES] And once you …

… For sequencing projects, once work is under way, raw sequence … More on Sequencing Projects …