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Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …

… … DAN UDWARY: You’re listening to the Department of Energy … welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based on their …

The CSP Functional Genomics call is to enable users to perform state-of-the-art …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop …

… … DAN UDWARY: You’re listening to the Department of Energy … Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …

… “Adopt a Genome” is an informal program for faculty to … work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge …

… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew that secondary metabolism is …

Metagenome-assembled archaeal genomes provide new insights into … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … enzymes.” Gribaldo will be speaking on “Exploration of Metagenomic Data to Understand the Diversity and Evolution of …

… … Dan Udwary: You’re listening to the Department of Energy … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …