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JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, atop … scientific discovery. Projects focused on organisms for comparative purposes, on model systems for microbe-microbe …

Metabolomics strengthens -omics technologies at the JGI by … functional genome annotation, improves understanding of the role small molecules play in diverse biological … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to …

The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If …

The Program focuses on developing computational tools and visualization resources that support user analysis of … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … context.  … The MycoCosm web portal provides data access, visualization, and analysis tools for comparative genomics …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … And they have all sorts of cool phenotypes that you can visualize by your eye. So one thing I like with fungi is, … projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, …

Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by the …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride right … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything … of enabling more comparative analysis and especially the visualizations. Right now, the only real visuals are sort of …