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Mission
… of Energy Office of Science user facility supported by the Biological and Environmental Research program, the … … Microbes constitute the largest reservoir of biodiversity and functional versatility on Earth. Their … environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to …
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FICUS Overview
… aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 23: Aaron Puri
… the answer would be that there’s actually a great deal of diversity within these methanotrophs for example, that are … supernatant and send that to back to JGI and have them do untargeted metabolomics, which we can then using some tricks … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, … is that you could, therefore, expect a lot of chemical diversity. So many compounds will fulfill the same function. … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for … bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the … Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome …
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IMG Group
AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based on their pairwise AF and ANI …
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Natural Prodcast Episode 2: The Primer, Part 2
… from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have secondary metabolism. They all have … we don’t recognize, because the only way to find things is by comparison. We’ll talk about that when we talk about … derivatives of natural products.  ALISON: Like such a large diversity can have similar effects, I think is also really …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … of the urgency to cultivate new microbial species.” Targeted Explorations for Understanding the Microbial World … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … to the public, ending the embargo at any point after data generation. The data will not be publicly available in JGI …
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The Expanding Universe of Methane Metabolisms in Archaea
… in nearly all types of anaerobic environments suggest the diversity of methane metabolisms is “vastly underestimated.” … Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… genetic differences and then expanded on on that knowledge by doing a second postdoc with Yi Tang at UCLA and then kind … mentoring. I enjoyed teaching and just helping the next generation of researchers in natural products and in other … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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