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Publications
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Data Policy
… of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Fungal & Algal Program
… Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, biodegradation and … This research helps translate their genomic potential into practical applications, including sustainable biofuels, …
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Microbiome Data Science Team
… The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … for breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with capabilities that had remained largely unknown and … DNA synthesis platform enables users to test hypotheses via designed and assembled physical DNA constructs that can then …
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New Lineages of Life Group
… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …
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Viral Genomics Group
… and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers … entire event. All participants are expected to be familiar with this policy. Our aim in hosting an event is to build a stronger community. Our goal is to create an …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … the pieces that attached to the other pieces, and sort of building out the puzzle from there to find that vein of …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to …
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Natural Prodcast Episode 12: Nadine Ziemert
… saw a potential mechanism for why there would be this streamlining? NADINE ZIEMERT: Yes, and just how one certain … is being this engineer that’s constantly refining its designs. But sometimes if you’re looking at it from a zoomed … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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