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S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Metagenome Interpretation-a benchmark of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic …

… bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. Department of Energy … mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to the JGI as … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …

… it into the feeds, but I’m trying, you guys. Schedules are hard. But, I’m working on it because I really do want … could imagine if you have two colonies of bacteria in the soil or something and they’re competing with each other, if … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … in Berkeley. I’m not in Paris.  ALISON: Oh my god. Where are we? I know, I know. I know.  DAN: You know where you … compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two carbons in a double …

This first episode up is another primer episode. These are episodes where Alison and I talk about a topic or kind … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … 11 of Natural Prodcast. Alison Takemura: Marnix, where are you right now? Marnix Medema: I’m in my room at home. Or … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …

Twitter friends, so– CASSANDRA QUAVE: Yeah, Twitter friends are the best. DAN UDWARY: Yeah, for sure. CASSANDRA QUAVE: … and culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

… collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities … create a login at https://signon.jgi.doe.gov ). Once users are notified that their proposal has been accepted, the PMO … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… secondary metabolism research, and I hope to be able to share a few more stories from there as we go forward. And … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that … box, we’re talking many, many orders of magnitude more players in the game, they’re all talking to each other, most …

… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … PI of the Laboratory for Biosynthetic Studies. Brian and I are old friends and colleagues, having both graduated with … off through these areas. And you can do– with a teaspoon of soil from outside, you maybe have to do a 10,000-fold …