Search

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …

… of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … gene expression, providing deeper insights into functional genomics. A key focus is understanding the interactions …

Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … to the 2-year use-restriction policy as described here. No single project has data under both use-restriction and …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff … for example, in terms of the stereochemistry, such that single changes can lead to a particular high activity … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … the Letter of Intent; rather proposals are submitted in a single step. … The researcher then submits a proposal for … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … sometimes correlated or anti correlated, also with other cellular functions in the same and as it was other bacteria …

… required documentation here .  … You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . This … ) Metagenomes and Single Cells: IMG/M   (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …