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The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis … on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific …

… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43(14):6761-71 … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

… to get into first, and the standing trees. And he had this whole idea of NaPDoS , this computer program which uses … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  …

… 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of strain engineering efforts. We did a lot of … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …

… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …

… add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … or phenotype of interest, prior to and in conjunction with whole genome sequencing. … Jean-Marie Volland: Assistant … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …