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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … contact us in advance for advice. … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Microbiome Data Science Team
… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours …     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … 2,208 102% *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of those in there, too. Mm-hmm, sure. And so, when we got rolling on the secondary metabolism part of it, what I was …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … integrated into the code base. And at the moment, we have rolling updates, so maybe a few months later it would appear … of the community. Dan Udwary: Well, that brings us full circle back to my introduction. So maybe that’s a good place …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… or so, people have realized that– especially in academic circles, none of us are getting rich off of the things that … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … that you can do with the data. And the data will just keep rolling in over time as it goes, so there won’t ever be a …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exception of …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and inter-organismal interactions, which are critical for advancing sustainable solutions in agriculture, energy …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic and ecological …
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