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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can …
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Microbial Program
… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …
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Who We Are
… user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and …
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Publications
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID … Manager will facilitate project execution by: Verifying metadata and coordinating with IMG , GOLD and others for data … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Institutional User Agreements
… of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … high-value partnerships among members that catalyze data flows and promote novel data applications. As a …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … provides customized analysis, the JGI also participates in publication of results. …
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Viral Genomics Group
… and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … our understanding of the impacts of these viruses on microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial …
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Products
… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 …
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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