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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … .   … In support of user science, the JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: https://doi.org/10.1093/nar/gkr944 ) … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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JGI Portals
Our data platforms are a key resource for the broader scientific … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … also encouraging community engagement and data exchange. … Phytozome is the JGI's Plant Comparative Genomics portal. …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … actually also for that we need also new standards and new platforms. So we’ve been recently working together with my …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to …
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Phytozome: a comparative platform for green plant genomics
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the IMG/M platform. Further, the JGI partners with the National …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … Synthesis Science Program Head Ian Blaby, JGI DNA Synthesis Platform Lead Grace Sprehn, JGI Policy & Agreements Analyst …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … DNA needed for these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of … spinosyns. And so we had a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of … plug– we want to plug these organisms into a drug discovery platform. So to me, the elephant in the room with regard to … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … annotation. … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome … Eventually assembly exercises will be made available on the platform through the KBase Educators Community. This group …
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