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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … comes to our existing libraries. Some of the limitations of platforms like GNPS, it’s very poor in terms of annotations …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … The majority of JGI projects come from the user community. Find …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small … of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … actually also for that we need also new standards and new platforms. So we’ve been recently working together with my …
Learn more
Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse … Find more details on the instrumentation we use and our methodology for metabolite analyses.  …
Learn more
Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … The Metagenome Program focuses on the high-throughput sequencing of …
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Phytozome: a comparative platform for green plant genomics
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … Check out our organism-agnostic CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
Learn more
Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of … focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation — … An assay used for profiling transcription factor binding …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … DNA needed for these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of … spinosyns. And so we had a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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