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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … approval (n/a if using web-based form) All shipments originating outside the United States must also include a …
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Protocols
… provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … just be within the chemists or just be within a group of evolutionary ecologists or something, so I think then you … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines …
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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … to enable advanced methodologies for determining gene origin and function. These species are carefully selected by … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 1: The Primer, Part 1
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … from is, from the bark of the yew tree, is where it was originally discovered. And so that sounds great. There’s a … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … to ask to most people. So one of those is like, what’s your origin story in natural products? Why are you doing this? … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … historically are tetracycline receptors. And so they were originally, I think, discovered in E. coli, but we can …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and …
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