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Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … about the project and he arranged funding to do it nonetheless from his own group’s funds. So I could start …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and you can really see there is a gene cluster, or there’s none anymore. So this evolution of really when you don’t … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … the same medium from the previous experiment, and you get non reproducible results, or chemical diversity. I mean, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

The mission of the Joint Genome Institute is to serve the scientific community as a … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … in An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria Check out the agenda for the JGI’s 2021 …

… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … another class of enzymes that my lab loves to work with are non-heme enzymes, and we work with them in a couple of …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … of genes. It was actually originally predicted to be a nonribosomal peptide synthetase but then flanked by these … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …