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… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …

… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … amino acid out of solution and stick another amino acid or multiple other amino acids onto it to create a small …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … E.M. & Dubilier, N. Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-5 … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … And one would envision that microorganisms have evolved multiple variations of these compounds. And so if you’re … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

The JGI Project Management Office carries out a number of activities to facilitate … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … biosynthetic gene clusters (BGCs), advancing pathway analysis, optimization of cell- and cell free-based … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, … your results as well as our library standards. … Metabolite Analysis & Metabolomics Instrumentation … Metabolite …