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… whole idea of NaPDoS , this computer program which uses phylogeny to predict compounds. And so I really had to dig … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … And really, it would be nice if there was just a certain molecular switch that you could put on to get them all …

Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control (from …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … one metabolite. They produce a large array of different molecular species related– chemically related– but … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … homology based, but then you’re using kind of a black box for the rule set. (Like antiSMASH, DeepBGC is an open …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … into practical applications, including sustainable biofuels, biomaterials, natural products, and environmental …

… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …