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Natural Prodcast Episode 11: Marnix Medema
… we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … I had so much fun with the computer. I was scripting and coding, that I never ever touched a pipet again except for, … problem in the field, that there were many papers reporting sequences and pathways– sequence is not right to say. But of …
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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … Before work can begin on proposals submitted by researchers from another DOE National Laboratory, a JGI-BDLUA ,  BDLUA …
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FICUS
… provides customized analysis, the JGI also participates in publication of results. … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … The ranked proposal list, along with a recommendation from management at the JGI and the other participating …
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Microbiome Data Science Team
… Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … al. (2015) Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43(14):6761-71 Kyrpides NC et …
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Data Policy
… PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, publication or citation of accession numbers in a …
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Data Policy & Support
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Natural Prodcast Episode 4: Nancy Keller
… DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting … species”… he’s now found that some fungi have different ITS sequences in their genome, which might get you a little … analysis. You don’t want to get clusters that are encoding the same things. And so you have to have good …
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Natural Prodcast Episode 6: Marc Chevrette
… in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … research, and I hope to be able to share a few more stories from there as we go forward. And Marc’s quickly built up a … the lab of Cameron Currie. They work primarily within the “fungus growing ant” system where there is a symbiont, a …
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University of California, Merced Internship Program
… to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and connect with Lab …
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Biotech Partners
… to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and gain connections …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … breadth. Across this set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein …
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Alabama Agricultural & Mechanical University Internship Program
… to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and gain connections …
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