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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity … including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … cells are characterized and selected as based on a specific functional trait or phenotype of interest, prior to and in …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … of host-virus interactions, the exploration of the functional dark matter as well as the development of novel …
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Natural Prodcast Episode 9: Roger Linington
… So, I’ve always known Roger as an expert in natural product structure elucidation, but more recently, he’s been leading … is going to be just invaluable to the natural products community. It’s a big international community effort, and I … to try and create an open source database of all known microbial natural products. So if you think about natural …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 … the JGI has a key role to play in providing high-quality, structured and curated data to support AI applications. In … and assembled physical DNA constructs that can then be functionally characterized.  Our metabolomics platform …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent … in rank order by the reviewers. The ranked proposal list, along with a recommendation from management at the JGI and …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … here. So definitely no, I do feel like an outsider in this community although both of you have been so wonderful. I … “tail of the acyl homoserine lactone” can have different structures, and that is akin to what you’re referring to …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … This research helps translate their genomic potential into practical applications, including sustainable …
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Natural Prodcast Episode 8: Eric Schmidt
… put some more info in the show notes, which you can find, along with a transcript at naturalproducts.com . We also … you can just take a pill, right? But with a small molecule potentially, you can do that. And so we were really lucky. … do you think it was about that? What factors led to the community – not necessarily competing, but – sort of, diving …
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Natural Prodcast Episode 11: Marnix Medema
… cluster database, and a tool for predicting natural product structures from genomes. And I was writing grants furiously … Tilmann on this. But this also has become very open to the community as well, so the versions of antiSMASH that we … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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Natural Prodcast Episode 7: Ben Shen
… a class of natural product with a really cool chemical structure. We try to explain it, but it’s chemistry, so I … not only I say we were able to make use of it, but also the community can benefit from the technology. But even better, … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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