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… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … (Nature 2019). Other projects in the group include the sequencing and comparative analysis of thousands of archaeal …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… Research in the Woyke laboratory focuses on the utility of … effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic tree … to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary …

… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …

… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … Industry Partners access to our vast set of resources:  JGI sequencing technologies include scaling technologies and …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … The Fungal & Algal Program harnesses cutting-edge sequencing technologies and advanced genomic analysis to …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open …

… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link …

… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … Download plant, algal, fungal and microbial genomes and metagenomes — … for technical help, feedback or a guided walk-through of the new Data Portal.  …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … this question in natural soil ecosystems by combining metagenomics with other omics approaches, including …