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… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  …

… to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the …

… are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …

Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

When submitting sequences to the JGI DNA Synthesis program, please … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …