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Viral Genomics Group
… driving virus:host dynamics in environmental microbial communities. This involves both experimental and … this question in natural soil ecosystems by combining metagenomics with other omics approaches, including … Multiomics approaches such as metagenomics and metatranscriptomics provide invaluable …
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Metabolomics Program
… microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, … cutting-edge metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, … and other data from EcoFAB systems can provide novel insights into the impact of microbial symbionts and their …
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Natural Prodcast Episode 23: Aaron Puri
… have to see if I’m going to slip a day on releasing it into the feeds, but I’m trying, you guys. Schedules are … community. For us, it’s these methane oxidizing bacterial communities that we like to look through as a lens, and … me in the woods then. [LAUGHTER] JACKIE: So we’re kind of across — covered quite a few different topics. And so right …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of … assay used for profiling transcription factor binding sites across entire genomes. This technology has been further … uniquely offers quantitative Stable Isotope Probing (SIP) Metagenomics to the broader scientific community. The …
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Community Science Program
… call is for projects that translate genomic information into biological function. The  New Investigator and … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from uncultivated genomes of the global human gut …
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Secondary Metabolites Program
… Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, … and bioenergy crop enhancement. The program aims to tap into the largely unexplored biochemical diversity within … of transcription factors and determine their binding sites across multiple genomes. Computational prediction of …
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FICUS
… they must utilize a broad range of the capabilities across at least two of the facilities, and generate datasets … provides customized analysis, the JGI also participates in publication of results. … to DOE mission areas.  Initiate a new LOI by logging into the   EMSL User Portal  and clicking “Submit a …
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Natural Prodcast Episode 18: A CSP Primer
… a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … genomes. Fungal plant, algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Natural Prodcast Episode 11: Marnix Medema
… it will be really good to maybe start with how did you get into this field? How did you get into natural products? … Did the global analysis of biosynthetic gene clusters across, well, at that time, all genomes that were out there. … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …
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Natural Prodcast Episode 14: Nigel Mouncey
… be back in a room with you, Dan. And to be actually sitting across the table from you.  DAN: Absolutely. It’s been a … thought I’d take an academic job then, but I ended up going into industry. Saw a job at Roche, and that was to work with … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Fungal & Algal Program
… This research helps translate their genomic potential into practical applications, including sustainable biofuels, … plant biomass production as well as converting biomass into bioenergy and bioproducts. The program’s fungal … program also explores microeukaryotic members of microbial communities, cataloging gene markers, and producing …
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