Search

… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some …

… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these …

… welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. … our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …

… visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … For DNA synthesis projects: data are subject to a  two-year embargo starting at construct or strain delivery.  …

… conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … scientific audience whereas now I’m sitting here with two people who know way more about natural products than I … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got …

… Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …

… are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators …  should fill out this form . Please allow a minimum of  two weeks for your request to be processed. Investigators …

… you’ll be hearing about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … better to do it together, to join forces instead of to make two competing tools. If we had known about your tool, Dan, … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on …

… Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, Canada. … mining, and how we might start to better connect those two things, because I think that’s ultimately what needs to … to try and create an open source database of all known microbial natural products. So if you think about natural …

… The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in …

… Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …