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… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

… yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

The Micro-Scale Applications group explores the genetic makeup of … technology in order to enhance the quality of single-cell genomes and directly link functional information with … analytical standards to accurately measure environmental microbiome activity levels.This functional assay lets us …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … especially if you want to know to which metagenome assembled genomes within a metagenome they belong and to …

… to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

… and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …

The JGI’s Metabolomics Program works to uncover the roles of small … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — …

The Facilities Integrating Collaborations for User Science … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN UDWARY: Hey everyone and welcome back to a new session of … our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and …