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… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … biosynthetic pathways, or at least, to a better margin of error and to be able to tie up– this is the flipside. This … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

The mission of the Joint Genome Institute is to serve the scientific … the Letter of Intent; rather proposals are submitted in a single step. … The researcher then submits a proposal for … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …

The central mission of the JGI’s Genomic Technologies department is   ensuring … automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy …

… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …