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JBrowse: a dynamic web platform for genome visualization and analysis
Learn more
Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … Check out our organism-agnostic CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
Learn more
Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
Learn more
Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … The Microbial Program focuses on using advanced sequencing technologies …
Learn more
Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and … pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … Plant microbiomes hold the amazing ability to influence plant development, fitness and health. This is a dynamic and complex ecosystem that includes bacteria, fungi, …
Learn more
New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic … Exploring the fascinating world of giant viruses, which challenge our … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …
Learn more
Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of … the show notes, which you can always find through the JGI website at  naturalprodcast.com . Finally, I’ll just mention … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This … While an ever-increasing number of phage and virus genomes have …
Learn more
Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … The Fungal & Algal Program harnesses cutting-edge sequencing …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of … the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that because … absence of oxygen. But these are the next step in the food web. So these are organisms– if you think about maybe you’re …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Scientific Program Product Description Deliverables Cycle Time FY25 Q1  …
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