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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … over 15 million viral genomes and fragments. … GOLD is a web resource for comprehensive access to information …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … of life, in a uniquely integrated context.  … The MycoCosm web portal provides data access, visualization, and analysis … novelties and expansions.  … ICE is an open source registry platform developed by the Joint BioEnergy Institute for …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Some reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of … the show notes, which you can always find through the JGI website at  naturalprodcast.com . Finally, I’ll just mention … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

Plants are complex organisms that harbor a fantastic diversity … pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… … DAN: Hey, everybody. Welcome back for another episode of … absence of oxygen. But these are the next step in the food web. So these are organisms– if you think about maybe you’re … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … analysis and genomics data exploration. … The Mycocosm web portal provides data access, visualization, and analysis …

Our data platforms are a key resource for the broader scientific … Portal to eventually replace the Genome Portal. … GOLD is a web resource for comprehensive access to information …

Below is a brief description of the process needed to prepare and … metadata is collected via spreadsheet or directly via a web interface prior to shipping samples to the JGI. PI sends … QC results, SRA accessions, library names, and protocol and platform details. The Sample QC report lists all the samples …

The Facilities Integrating Collaborations for User Science … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Mass Spectrometry, NanoSIMS, and other techniques. … APS webinar … EcoFAB webinar … JGI and EMSL resources webinar … …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …