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Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … such a standard and also going back into and finding [and] annotating gene clusters that have been published in the …

… to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great … biosynthetic enzymes. ” And CORASON, for large-scale comparisons of biosynthetic gene clusters: “ A computational …

… can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …

Our data platforms are a key resource for the broader scientific … of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …