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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has … gene synthesis, combinatorial pathway design, and efforts to refactor entire chromosomes, such as a yeast …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …
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JGI Portals
… discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of …
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Improving the Cacao Genome and Phytozome
… will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now available for … . One of the goals in updating the genome annotation was developing a high quality node for cacao used …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, …
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