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… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … between microbes and eukaryotes and their impact on ecosystem function: We investigate the intricate networks of …

… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … when it’s, well, when the code is good enough, it can be integrated into the code base. And at the moment, we have … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …

… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire … and connect our data to the broader biological data ecosystem. Our community of data-downloading users spans tens …

… works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … is a larger portal for microbial genomics. IMG stands for Integrated Microbial Genomics. It’s one of the big data …

… the design and synthesis of complex genetic pathways and biosystems. It The program fosters collaboration with U.S. and … functional genomics, focusing on developing genetic systems that can address global energy and environmental … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

… making it difficult to propose projects that truly integrated the capabilities of more than one facility. The … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … provides customized analysis, the JGI also participates in publication of results. …

… then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however … host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral Genomics … While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, …