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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … a siderophore, we should look carefully at these as being candidates siderophores. Or for cell-cell signaling or for, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … that were being very successful and taking preclinical candidates into the clinic and to INDs. And it seemed as … cryo-EM studies to find the binding site. And then we did CRISPR and directed evolution to evolve resistance in the …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … how nature is making compounds, but we are also applying CRISPR technology, anything as genome editing, genome …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The …
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Identification of over ten thousand candidate structured RNAs in viruses and phages
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … can be refined for best results, often by starting with identifying the right ingredients. Researchers collaborating … developing alternative sustainable fuel sources. Developing candidate bioenergy feedstocks that can thrive in saltwater …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with Nadine … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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