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… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence data, …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … Facilities Integrating Collaborations for User Science (FICUS) initiative, Director’s Science (DS), Biological and … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for uncultivated …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Metagenome Program focuses on the high-throughput sequencing of … reconstruction of complete or near-complete population genomes directly from the environment. These advances have …

… and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  … Tips for High Molecular Weight DNA extraction: …

… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic … to soil carbon storage during simulated range shifts of plant-fungal symbionts …

… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other bioenergy solutions.  … tools that enhance biofuel production and biosystem design. High-throughput design and synthesis capabilities accelerate …

… mining and the directions it might take in the future. I highly recommend it. I’ll link to it in the show notes. … it worked pretty well. DAN UDWARY: No, they were very high quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … least a certain level of similarity. So if similarity was higher than a certain kind of volume. And if you do that, … and good assembly. They were able to assemble a really high quality metagenome of the endosphere microbial communities …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the …