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… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … has led a vision for the JGI that sees secondary metabolism analysis and research as a driver for novel technologies …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …