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Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …
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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… in medicines for people, but also those molecules that mediate a well functioning ecosystem and environment and … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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SPRUCE-ing Up Science
… fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial communities mediate Sphagnum peatmoss …
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Data Policy
… of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold … that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in … is vital to preserving peatlands in the face of a warming climate. Identifying these sex chromosomes and their …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … with each other and coordinate group behaviors. And so immediately you know like I said, we’re making all of these … community. For us, it’s these methane oxidizing bacterial communities that we like to look through as a lens, and …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with … him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the …
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Institutional User Agreements
… Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … performance period, your Project Manager must be notified immediately. Either of these changes may require new signed …
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