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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … cycling, nutrient cycling, and energy flow. One of the key goals of the Program is to develop a deeper … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, … processes that control the environmental fate of key elements with an impact on BER’s energy and …
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Metabolomics Program
… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … providing deeper insights into functional genomics. A key focus is understanding the interactions between  plants, …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …
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Viral Genomics Group
… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … strains. This approach allows for the identification of key functional traits that have direct applications in … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … the season. They may be shocked to know that some of those key ingredients, things like nutmeg, and mace, or cloves, … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … being able to zoom into particular gene clusters that play key roles in these microbiome associated phenotypes. Alison …
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Natural Prodcast Episode 18: A CSP Primer
It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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