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… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … So then you have this chemical profile. And this is a game based on all those limitations. That’s what you’ve got in … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … all connected. And you can color these nodes. For example, based on taxonomy, or based on class of biosynthetic … within a metagenome they belong and to which – what are the taxonomic assignments of those, et cetera. Instead of just …

Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and civility in all discussions and debate; Make decisions based on merit of issues; Act honestly, transparently, and …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … is, then this is the podcast for you. A lot of this is based on a really great paper that came out in 2020 where … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … we started to see this potential of looking for compounds based on these gene clusters. And that was my job at the … on rich media by culturing them. DAN UDWARY: OK, what’s the taxonomic distribution? Is it significantly different than …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … and may also be added during the proposal lifecycle based on scientific need. Proposals are considered complete …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … A. et al. (2016)  Metagenomics uncovers gaps in amplicon-based detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … an era of ‘homology creep’, function prediction as purely based on annotation may not be sufficient. A more recent … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … aligning with the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …