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Single Cell Research Group
… of microbial metabolism towards a minority of cultivated bacteria, still persists to date. Research Team    … … show that the gap between cultivated and uncultivated Bacteria and Archaea has steadily been widening since 2005. … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 11: Marnix Medema
… on synthetic biology of engineering gene expression in bacteria – however, the professor was actually quite … we also do a lot of the analysis. So we actually like to be among the first people to use these tools as well on … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …
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Natural Prodcast Episode 6: Marc Chevrette
Handelsman’s group at the University of Wisconsin, where, among lots of other things, he works on the Tiny Earth … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that … synergistically or just tolerating each other within a niche. So those are big questions. I think that’s where my …
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Natural Prodcast Episode 7: Ben Shen
… so I hope somebody’s going to find them useful! DAN: Among many other things, Ben is maybe best known as an … where in particular areas, or particularly as by ecological niches, the natural product could be there. So this has … origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the 40,000 from bacteria, there’s …
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Natural Prodcast Episode 12: Nadine Ziemert
… they spread, why do they spread in a certain way from one bacteria to another, how do they change then, and why are … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … of these environments? NADINE ZIEMERT: So we started with soil. But we also have, in collaboration with other people, …
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Mission
… areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated partnerships are the DOE … energy and environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …
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Natural Prodcast Episode 17: Cassandra Quave
… and culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or … a check-up on me. And I wonder how that intersects with bacterial bioprospecting that is often done, where we’re … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Institutional User Agreements
… terms and conditions in the User Agreement.  These include, among others: indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Metabolomics Program
… the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and … the interactions between  plants, microbes, and soils relevant to key environmental processes and the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … competition so that they can survive in their ecological niche. ALISON TAKEMURA: Yeah, bacteria sound like a good … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …
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Webinars on Offerings & Capabilities
Photon Source when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …
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Natural Prodcast Episode 8: Eric Schmidt
And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more progress faster, … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the … of RiPPs, there’s no better place to start than with the publication that defined it . Oh, one more thing! In the …
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