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Industry Engagement Program
… and curated data to support AI applications. In an effort to lead AI-driven genomic innovation to advance … characterized.  Our metabolomics platform delivers rich metabolite profiles from diverse biological and environmental samples … process is streamlined, with defined deadlines and straightforward submission steps.  …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … as we were mentioning before, of more complex secondary metabolites that an organism might want to use to affect its … a particular signal with a particular synthase amino acid sequence we think that can be a great resource for the …
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Natural Prodcast Episode 2: The Primer, Part 2
… this time. Let’s jump right in. — DAN: So secondary metabolites. I kind of inferred through the stories I told … the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and … and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that … under three watering conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … are built up from amino acids, so they’re secondary metabolite peptides. And there are two ways that nature does … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals …
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Natural Prodcast Episode 12: Nadine Ziemert
… ZIEMERT: Big picture, I want to understand how secondary metabolites evolve– who makes them, how do they spread, why … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … in collaboration with other people, lake sediments. We have microbiomes from different organisms, including the human …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights …
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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements … linked to custom interfaces and visualization tools for user analysis. Additionally, the Program works to link …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … metabolism and centralized metabolism, or what a secondary metabolite is versus what a specialized metabolite is, then … antibiotic. So you can start looking into these type of profiles or patterns from the molecular networking. So …
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Who We Are
… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … biotechnology through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … carefully to ensure that your request is appropriate for that call. Learn more about the  average base outputs …
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