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Natural Prodcast Episode 23: Aaron Puri
… now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … thing I’m really fascinated by looking at the field of cyanobacterial chemical ecology and all of that. So again, …
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Plant Program User Advisory Committee
… The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective … nor does it direct the Program's management team on how to operate and manage the Program. …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  … pathways, enabling modeling of microbiomes based on functional traits. These advancements provide new …
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Cyanobacterial-based approaches to improving photosynthesis in plants
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into … Yeah, it certainly could. You can imagine lots of different approaches to sort of tackling this kind of a problem that …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology … of throughput. We also develop methods for efficient QA/QC based on next-generation sequencing technologies including … novel enzymatic activities using phylogenomic driven approaches, and understanding the design principles for …
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Industry Engagement Program
… Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions — with … largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with … Our User Programs entail a competitive, proposal-based process including peer review. The process is …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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