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Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … air quality and promoting a circular economy. Acetogenic  Clostridium is considered the most efficient method of … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … that will be sent from JGI when their technical work is completed.  Having the MTA in place before work starts will …

… for bioenergy and bioproduct applications. The program has completed over 70 projects, including gene synthesis, … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …

… structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …

The mission of the Joint Genome Institute is to serve the scientific community as a … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … novelties and expansions.  … The SMC provides complete sequence and annotation data for secondary …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … nearly 18% of all existing species. Additionally, the complete linkage clustering made it possible to confidently … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

… is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … signatures of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary …