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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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Natural Prodcast Episode 4: Nancy Keller
… looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something … contigs. And so most fungi… Oh, the fungi vary in number of chromosomes. Like, ironically, yeast, which has a small … understand that a little bit better, with some advances in evolution and cell biology. I’m interested in that. And we …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … And I really dove into microbial physiology and microbial genetics, and really away from chemistry and synthesizing … So that’s– so that could be an example of convergent evolution, but just speculating there. But it’s interesting …
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Natural Prodcast Episode 12: Nadine Ziemert
… And I found her review in natural product reports on the evolution of genome mining and microbes with Mohammad … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … metagenomes, we gain insights into microbial interactions, evolution, and adaptation, ultimately informing strategies …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … about here. JGI, as an institution has recognized how important natural products are to understanding the natural … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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Natural Prodcast Episode 16: Marcy Balunas
… And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … so they end up probably over time dispersing across the chromosome. So I think that’s my feeling.  And so it could … was episode 6.] about this. And really his focus was on the evolution of these systems and I understand you’ve worked on …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility … Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … uncover these hidden biochemical resources by exploring the genetic pathways responsible for their synthesis. The …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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