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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant kingdom to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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CheckV assesses the quality and completeness of metagenome-assembled viral genomes
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI …
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Prokaryote Program User Advisory Committee
The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the effective … management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee … Program strategy, operations, and scientific relevance and quality. The Committee does not perform management functions …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … for you or thousands metagenomes. And I think also the quality that we provide. So for fungal and for a lot of our … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses viral genomes, and grades their quality based on completeness. Along with expanding the …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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