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… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … advanced tools, including deep learning algorithms for gene annotation and protein folding models, to improve the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … of platforms like GNPS, it’s very poor in terms of annotations on plant natural products. Rich, rich in …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … may also be added during the proposal lifecycle based on scientific need. Proposals are considered complete when all …

… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 …     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a …

… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … libraries.  We have developed and continue to improve automated assembly pipelines bringing in new technologies, …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … or outside the scope of the call.  Letters are reviewed by scientific staff of the participating User Facilities, as …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene … serves as an important line of communication to the scientific community. In each episode, hear from luminaries …

Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … the samples, and the sample QC results. … Analysis and annotation of publicly available projects can be accessed … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … 10 or 20 genomes at once then we really need to have automated tools for this. Because well, you can’t do this … For sure. I mean, that goes all the way back to NCBI, gene annotations and ontologies and things that — things have …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … Alison has done a really nice job of providing that general scientific audience whereas now I’m sitting here with two … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …