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Microbiome Data Science Team
… et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol .  15032 … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize … et al. (2016)  Metagenomics uncovers gaps in amplicon-based detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Frequently Asked Questions: Project Management
… our HERE (TK) .   Please inform your project manager of an accurate date of sample preparation and anticipated … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … … work done by the JGI. More information is available in our Publications Policy on our Data Policy & Support page.  … …
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Synthesis
… constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or …
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Natural Prodcast Episode 19: Bill Fenical
… it did. And of course, we now know that the ocean is as complex or even more complex, chemically, than any of the … by Bristol Myers Squibb. And it is now in phase III in multiple sites, phase III human clinical trials. ALISON … historical terms, has avoided looking at some of the most rare and non-obvious microbes. The pharmaceutical industry …
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Natural Prodcast Episode 6: Marc Chevrette
… technology, which is usually what we refer to as “short reads”. So that kind of resolution isn’t sufficient to put … that could have something to do with it. We saw hints of a rare advantage. So if you’re not the most popular pathogen, … with three members, the interactions there are incredibly complex and some of them are synergistic, meaning that …
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Metagenome Program
… sequencing of microbial communities to uncover the complex interactions and functions that shape ecosystems. By … in unexpected microbial clades. We leverage  genome-resolved metagenomics and targeted gene searches to expand … ) to enable the research community to perform large-scale multi-omics analyses on new and existing microbiome data.   …
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FICUS
… researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … submitting a successful proposal. … Accessing Resources at Multiple DOE User Facilities with a Single Proposal …
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Mission
… to support the global research community in studies of complex biological and environmental systems. We optimize … with the staff of the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC) … BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for …
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Natural Prodcast Episode 20: Brian Bachmann
… and enzyme systems to do synthetic analoging of some really complex bioactive natural product molecules. It’s a wide … actinomycete-specific approaches. And you can enrich for rare actinomycetes by doing some tricks. Treating them with– … the metabolome into well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell … model system by identifying phages and characterizing this multipartite phenomenon in additional plant and bacterial … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Special Initiatives & Programs
… for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are required. … instead. Proposals may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics … and access to capabilities. Length of stay depends on the complexity of the project being considered and availability …
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