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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … survival. Those molecules, over evolutionary time, become targeted to certain biological systems in the target …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy … and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … samples move through QC and into the library and sequencing pipelines.  You will receive automated emails as raw …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint … of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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A pipeline for targeted metagenomics of environmental bacteria
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … run them through, and they just have to sort of go into the pipeline for addition. So yeah. So it’s a big data … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  …
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Data Policy
Data produced and released by the US Department of Energy … Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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