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Natural Prodcast Episode 11: Marnix Medema
Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In the last episode , … secondary metabolism pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen … last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… is Dan with episode 13 of National Prodcast. This continues our little section on international genome miners, and … are microbes that will actually redefine how you synthesize nucleotides. Stuff that are at the core of what we call the … the Nature Chemical Biology — or early this year– this new tool that we call CORASON, which is basically an acronym to …
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Natural Prodcast Episode 10: A Primer on Genome Mining
This first episode up is another primer episode. These are episodes where Alison and I talk about a topic or … We compare those sequences with our sequence. The premier tool for that these days, the one that pretty much everybody … where did the gloves come from? Well, they come from some nucleotides, some DNA. DAN UDWARY: Yeah, no, that’s actually …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Natural Prodcast Episode 15: Katherine Duncan
… to be Katherine Duncan or Dr. Duncan? Kate Duncan: Oh, goodness. I mean, if you were to find my scientific papers, that … natural products data that there is and putting things, coalescing them, so that we can really make discoveries. And so … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project … through  JGI Genome Portals Coordinate data analysis tool tutorials, as needed Upon completion of all work …
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The Switchgrass Genome: Tools and Strategies
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Plant-Microbial Interactions Group
… organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial … detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of …
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A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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