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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in the future, the … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that … 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding your vein of gold with aflatoxin? DAN …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as … Find more details on the instrumentation we use and our …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The … 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations All MycoEd …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … to interesting natural products that we can use successfully, hopefully, in the future even more so as novel … nothing for. We’re also working on organisms, pathogenic fungi like Candida aureus in the lab and we work on …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down … and bacteria are more active in fixing and metabolizing nitrogen, a key ecosystem nutrient. The Impact This study is … This work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … it turns out, you know, high CO2. Turns out you know, when nitrogen levels change in the ocean, you begin to see those … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … of DOE mission priorities. Data discoverability and accessibility are critical requirements for amplifying the … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … or manipulation of the DNA of genes and bacteria, occurred much faster earlier than they did with fungi. And it …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t cause much damage to the hosts, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite … organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …
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