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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering … plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence … annotations, and analyses available to the community at large. In most cases where the JGI provides more customized …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and …
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Natural Prodcast Episode 20: Brian Bachmann
… tell us what’s active, which peak is active before we even scale up. The reason that we did that was to fit what we … active in a heterologous host. So what you really need is a large tool kit of pieces in order to put them together to … and Analogues” And links to the abstracts for the SIMB posters we mentioned at the end: Henry Schares:  …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by …
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 …     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …
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Natural Prodcast Episode 9: Roger Linington
… those two groups and the ways in which they approached scientific problems. And so that sort of opened my eyes to … sophisticated tools, because now we had a very reasonably large set of articles which had been manually curated for … is likely to be in the environment? Can we use this broad-scale view of the chemistry in order to start to make …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial research that drives …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … you to be able to do it. I think this thing exists for the scientific community, not for my research. Nigel’s already …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … symbionts deeply branching in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Sequencing Submission Requirements for DNA Synthesis
… add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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