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… renewable energy and agricultural productivity. Research spans diverse areas — from understanding how … These species form the basis of plant research in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … observation of the work of anybody who has been doing research in this field– is that that’s true for one compound …

… high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in energy, … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection of … Microbial Genomes — Virus Resources … Genomes Online Database … Microbial Program in Detail … Projects and …

… by those generating data. The JGI Data Policy applies to research data and analysis products (referred to as “data” … Director’s Science (DS), Biological and Environmental Research Support Science (BERSS), or Bioenergy Research Centers (BRCs). Overview … Embargo : A …

… we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This interview is … ancient times! We know how to ferment beers or wines or rice liquors etc. So, by sequencing the genome of … so everybody, readers of the library, can come to our databases and look for the specific information they are …

… efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … was working on a natural products/biosynthetic gene cluster database, and a tool for predicting natural product … I wish I could use this tool. I don’t have this kind of research area though, so. Dan Udwary: You can, Alison, …

Maybe if you could talk about what your– I don’t know– research background pedigree is. I hate to like sort of like … and InterProScan. And all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a … going to ask. So this is a repository of BGCs from public databases. And so what if a researcher– like, my lab, we …

… gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , the Secondary Metabolism Collaboratory (SMC) has launched as an interactive public database for the research community. With more than 13 …

… with Nancy Keller, a fantastic fungal natural products researcher from the University of Wisconsin. Like we … for … well, as long as I can remember, by bacterial research.  So it was great to hear her passion and … at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something right away, …

… again? DAN UDWARY: I was just asking if the Scripps research … NADINE ZIEMERT: Oh, yeah, Scripps. Yeah. DAN … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … lot of information out there is not easily searchable or in databases, where you can easily get information. Usually, in …

… name, and also extremely well-organized, makes doing research on a person very easy. Kate Duncan: Well, so, I did … gene clusters of those.And they’re just like nothing in databases that currently exist. We looked at chemistry, so … something new? And we could only do this by comparing it to databases that were quite often commercial, that were quite …

… platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of strain … We had a really beautiful fermentation development lab and research lab all the way from Ambr250 fermenters to 2 liter … about JGI, learn about the national lab system, doing some research then. Of course, I never worked with national …