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Who We Are
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric genomic science user …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …
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Natural Prodcast Episode 16: Marcy Balunas
… all the cool things you’re doing now?  MARCY: Sure. So my lab has really converged on the study of host-microbe … so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to … may not be sufficient. A more recent effort in the Woyke lab is therefore focused on the application of  … Scott Clingenpeel: Industrial Hygienist, Berkeley Lab Devin Doud: Principal Scientist, Kintai Therapeutics , …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … don't necessarily move. BETSY PARKINSON: They're not moving. No, they definitely aren't. And so this is a really … They both have the genes. The genes are pretty much 100% identical. We don't know why one is expressed over the …
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Natural Prodcast Episode 7: Ben Shen
… I think we’ll be on a pretty regular schedule for a while. Moving forward, I’m hoping to get a new one out every two … think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … a 6% successful drug discovery rate.   And this is 100 times better, on average, in comparison to the drug …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … and scientific research, especially at US National Labs, like Lawrence Berkeley Lab (that’s LBL), the National … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… I talk about SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … microorganisms that may be of interest to you and folks at JGI. These organisms we’re finding– at least by looking at …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … I always use it as the first word in the title of my talk, 100% fair for you to make that association. DAN UDWARY: So I … ALISON NARAYAN: –those types of data sets and start moving in that direction, to at least have the data to do …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … That could be a couple of decades away. But things are moving faster all the time. And a classical example of when … of orgasms. And so we have all of that information. We have 100,000 or really about 87,000 what looked to be novel …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities … Area, and established programs affiliated with the Berkeley Lab A-LIFT team.    Overall, our aim is to inspire students … opportunities and ultimately, an understanding of the JGI’s role in enabling complex biological and environmental …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … DE-FOA-0003615 , which are both eligible for BERSS). Available Resources All JGI products are available through … for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are …
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